Multiple Monitors

I've been running two monitors for the program but found it a bit klunky to edit a word processor document on top of one of the screens. So I added another monitor to host the word processor. Now when EOSnomad starts up it spreads across all 3 screens which is OK I if can put my other program on top. Unfortunately having placed my other program on top, after about 10 seconds the EOS desktop wants to push itself to the front and hide my program! Is there a way I can restrict EOS to using only two of three monitors?

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