Here's an issue that I've had for a while, and was surprised it hadn't been dealt with in the new software version.
I store channels 1 thru 6 running effect 1 into a cue, and I have adjusted the size and rate of that effect in the effect status display.
If I later recall channels 1 thru 6 from that cue, the are running Effect 1 at the size and rate of the effect as listed in its direct select, not as stored in the cue. I would expect to have the lights do exactly what they are stored as doing in the cue, not create a new reference to the effect.
Another thing that makes it difficult to recall and reuse effects from previous cues is ordering. That is, say I select the channels as 1, 3, 5, 2, 4, 6 instead of as 1 thru 6, then put them in effect 1, then store them in a cue. If I recall channels 1 thru 6 from that cue, they will come up running the effect in the order I selected them for the recall operation, rather than running the effect as they were stored in the cue.
To understand why these are issues, just consider the simple request, "have 1 thru 6 do what they were doing in cue X".
-Jason